@PauloCereda I am sorry for asking too much today, but after installing arara from TeXlive manager, it fails to compile the file and gives me this error: "C:\texlive\2016\bin\win32\runscript.tlu:679: command failed with exit code 1: java.exe -jar c:\texlive\2016\texmf-dist\scripts\arara\arara.jar ThesisLuaLaTeX"
However, when I used arara.exe file I downloaded from github, it worked smoothly. Any suggestions for this problem?