But anyway, yeah, the loopholes. So, keep in mind that I still haven't found anything in your system that definitely breaks, but some of it seems like it could be problematic. The main one is this: while you didn't say it explicitly in your summary, I have to assume that when you open a portal, you copy every universe that your universe has ever interacted with, including those that have temporarily closed their portals to you.
The reason is that otherwise, you could make infinite energy or money. Just copy yourself, hand yourself a dollar, then close the portal and repeat (hand your copy 2, then 4, etc.). Since the closed portals don't duplicate, the money grows exponentially but the number of people you split with grows linearly.