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A: Why are the $\mathbf E$ and $\mathbf B$ fields of an electromagnetic wave mutually perpendicular?
They're not. There's plenty of situations where the $\mathbf E$ and $\mathbf B$ fields are not orthogonal to each other or (where the latter can be defined at all) to the wavevector $\mathbf k$. Notable examples include tightly-focused gaussian beams, waveguides, and spherical waves, but it's ple...