In fact I just "repaired" (Win slang for reinstall per system) Vagrant to properly update from 1.5+ to 1.6+. Then just dropped Xhprof from the PuPHPet config.yaml and everything worked.
@ALL Anybody know where in the PHPStorm "Code Style" settings I can find that alignment? For some reason there's one tab too much - but only inside function params. Tried nearly everything (in Codestyle > PHP).