Actually, can't we cheat as follows: Let $\tilde{M}\rightarrow M$ be the oriented double cover and take two embeddings $f,g\colon D^n\rightarrow M$. Since $D^n$ is simply connected, these lift to embeddings $\tilde{f},\tilde{g}\colon D^n\rightarrow\tilde{M}$.
$\tilde{M}$ possesses an orientation-reversing deck transformation, so assume WLOG that $\tilde{f},\tilde{g}$ are equioriented. Since $M$ is non-orientable, $\tilde{M}$ is connected, so that $\tilde{f},\tilde{g}$ are isotopic by the previous argument. Then project down to get an isotopy between $f,g$.