Although I'm sure this will change over time, one current drawback to
biblatex/biber
at the moment is the fact that most journals that accept LaTeX files won't accept
biblatex
. See e.g.
tex.stackexchange.com/q/12175/2693 One thing that would help this would be a way to have the bibliography incorporated after the fact into the LaTeX file. Is this something that might be possible?