the intuition here is $\operatorname{Spec} \mathbb{Z}[X]$ is 2-dimensional, so it looks like a surface
you're looking at how this surface fibres over the curve $\operatorname{Spec} \mathbb{Z}$ a curve, - so the vertical lines denote the fibres ("preimage") of the primes $(2), (3), \ldots$ in the map $\operatorname{Spec}\mathbb{Z}[X] \rightarrow \operatorname{Spec}\mathbb{Z}$
the bottom horizontal line is a copy of $\operatorname{Spec}\mathbb{Z}$ in $\operatorname{Spec}\mathbb{Z}[X]$, i.e. the subscheme defined by the ideal $(X)$ (hence you also see the generic point of this guy "on the ri…