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2:27 AM
posted on October 13, 2021 by raiza

Hello, I’m currently trying to simulate a 4 molecule system. Each molecule has around 170 atoms, so I’m using moltemplate to join the datafiles and generate a lammps input file which includes all the molecules with their corresponding force field coefficients. I have been using the Itemplify.py script to generate the .lt files for each molecule, but when I try to run moltemplate.s

 
 
5 hours later…
7:39 AM
1
Q: How likely is it for a highly-cited paper to publish non-equilibrated results?

Barbaud JulienI know the title sounds opinion-based (and admitedly, part of my question is), but I will try to bring more practical elements to the question: Here is my problem: I have been testing a force field published in a peer-reviewed paper, and later used by quite a few other authors (I am not sure if I...

 
8:34 AM
posted on October 13, 2021 by Lamm_Gro1

Hi. I want to use the generalized replica exchange method on my system and I use the “temper/grem” command for this purpose! The swap between adjacent ensembles when I use NPT simulation does not happen but when I change the NPT simulation to the NVT simulation this swap occurs! Can you please let me know what can be the problem in this case? Best, Saeed. 1 post -

 
 
6 hours later…
2:17 PM
posted on October 13, 2021 by shuting_wang

Hi, As mentioned in the title, are there any methods to count the number of interactions between certain atoms ? For example, I have a polymer system, and I want to count the number of H bonds formed between H atoms and H atoms in this system. Do you know any method to achieve this goal ? Thank you very much. Best Shuting Wang 3 posts - 3 participants R

 
 
7 hours later…
9:12 PM
posted on October 13, 2021 by Tyson_Whitehead1

I attempted to work with a pruned history as suggested in 2987 for a work around to the 100MB large blob issue github.com/lammps/lammps Repositroy history contains >100MB blobs that don't work with github... opened 10:22PM - 08 Oct 21 UTC closed 06:13PM - 12 Oct 21 UTC

 

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