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6:56 PM
So i was working on programming genetic simulator for a space colony simulator . . .
I have some basic questions, and i don't know if they are specific enough for an actual bonified question.
As i understand, a 'Codon' is a group of three nucleotides. because ATCG is base 4, the number of combinations are 4^3 = 64. there are, however, fewer actual proteins, and redundancy as far as which codons code for which proteins.
 
...and then you have the stop codons as well.
 
i instinctively would assume symmetric combinations such as 012 and 210 would yield the same protein. this would only reduce the number of uniq combinations as well
to 40
Genetic record separators . . .
 
No, since the transcription has directionality.
 
but do the amino acids has directionality?
 
ATG and GTA correspond to different amino acids, for instance.
 
7:09 PM
mmk, that makes sense.
 
@punkerplunk A peptide has directionality, too. Gly-Ala and Ala-Gly are different.
Directionality, in molecular biology and biochemistry, is the end-to-end chemical orientation of a single strand of nucleic acid. In a single strand of DNA or RNA, the chemical convention of naming carbon atoms in the nucleotide sugar-ring means that there will be a 5′-end, which frequently contains a phosphate group attached to the 5′ carbon of the ribose ring, and a 3′-end (usually pronounced "five prime end" and "three prime end"), which typically is unmodified from the ribose -OH substituent. In a DNA double helix, the strands run in opposite directions to permit base pairing between them,...
 
I was thinking, because the protein would be encoded, and than 'drift away' from the nucleotides their order might not carry over when forming amino acids.
 
Not really.
In molecular biology and genetics, translation is the process in which cellular ribosomes create proteins. In translation, messenger RNA (mRNA)—produced by transcription from DNA—is decoded by a ribosome to produce a specific amino acid chain, or polypeptide. The polypeptide later folds into an active protein and performs its functions in the cell. The ribosome facilitates decoding by inducing the binding of complementary tRNA anticodon sequences to mRNA codons. The tRNAs carry specific amino acids that are chained together into a polypeptide as the mRNA passes through and is "read" by the ribosome...
 
(the pit falls of abstract mathmatics)
thanks this answers some questions.
when i would simulate sexual reproduction (it's all numbers and nothing naughty i swear) I would simply map two parent 'strings of dna' along side and randomly select a nucleotide form each loci to fill the child loci. how ever that's not a very accurate representation?
 
@punkerplunk It's chromosomes that are contributed by parents.
 
7:24 PM
so, i would be swapping longer chunks of strings
 
You're needlessly mixing levels of abstraction here, I think. Best to consider chromosomes as a unit, if you're considering reproduction.
Take sex. The female always provides an X chromosome. Whichever of the two possible sex chromosomes is provided by the male will then determine the sex of the resulting offspring.
 
so which is considered a chromosome, the 'X's and 'Y's, or the whole 'XY', 'XX' combination?
 

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