Late to the discussion (Tokyo time), but I read through it so far. I'm a little concerned about migrating questions to CS theory. Many migrations could be appropriate, but some really do straddle the boundary between CS and physics. Take for example the one question I managed to ask:
http://theoreticalphysics.stackexchange.com/questions/505/master-equations-and-operator-sum-form
http://theoreticalphysics.stackexchange.com/questions/505/master-equations-and-operator-sum-form